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      • Uniclust30
      • UniProtKB
      • UniRef100
      • UniRef30
      • UniRef90
      • Updated databases for ColabFold
    • Using HuggingFace Datasets

Documentation

  • Requesting An Account
  • Get Started
    • Quick Start
    • Common Terms
    • HPC Resources
    • Theory of HPC
      • Overview of threads, cores, and sockets in Slurm for HPC workflows
    • Git Guide
  • Connecting to Unity
    • SSH
    • Unity OnDemand
    • Connecting to Desktop VS Code
  • Get Help
    • Frequently Asked Questions
    • How to Ask for Help
    • Troubleshooting
  • Cluster Specifications
    • Node List
    • Partition List
      • Gypsum
    • Storage
    • Node Features (Constraints)
      • NVLink and NVSwitch
    • GPU Summary List
  • Managing Files
    • Command Line Interface (CLI)
    • Disk Quotas
    • FileZilla
    • Globus
    • Scratch: HPC Workspace
    • Unity OnDemand File Browser
  • Submitting Jobs
    • Batch Jobs
      • Array Batch Jobs
      • Large Job Counts
      • Monitor a batch job
    • Helper Scripts
    • Interactive CLI Jobs
    • Unity OnDemand
    • Message Passing Interface (MPI)
    • Slurm cheat sheet
  • Software Management
    • Building Software from Scratch
    • Conda
    • Modules
      • Module Usage
    • Renv
    • Unity OnDemand
      • JupyterLab OnDemand
    • Venv
  • Tools & Software
    • ColabFold
    • R
      • R Parallelization
    • Unity GPUs
  • Datasets
    • AI and ML
      • AlpacaFarm
      • audioset
      • bigcode
      • biomed_clip
      • blip_2
      • blip_2
      • coco
      • Code Llama
      • DeepAccident
      • DeepSeek
      • DINO v2
      • epic-kitchens
      • florence
      • gemma
      • glm
      • gpt
      • gte-Qwen2
      • ibm-granite
      • Idefics2
      • Imagenet 1K
      • inaturalist
      • infly
      • instruct-blip
      • internLM
      • intfloat
      • LAION
      • lg
      • linq
      • llama
      • Llama2
      • llama3
      • llama4
      • Llava_OneVision
      • Lumina
      • mixtral
      • msmarco
      • natural-questions
      • objaverse
      • openai-whisper
      • phi
      • playgroundai
      • pythia
      • qwen
      • R1-1776
      • rag-sequence-nq
      • red-pajama-v2
      • s1-32B
      • satlas_pretrain
      • scalabilityai
      • sft
      • SlimPajama
      • t5
      • Tulu
      • V2X
      • video-MAE
      • videoMAE-v2
      • vit
      • wildchat
    • Bioinformatics
      • AlphaFold3 Databases
      • BFD/MGnify
      • Big Fantastic Database
      • checkm
      • ColabFoldDB
      • dfam
      • EggNOG
      • EggNOG
      • gmap
      • GMAP-GSNAP database (human genome)
      • GTDB
      • igenomes
      • Kraken2
      • MGnify
      • NCBI BLAST databases
      • NCBI RefSeq database
      • NCBI RefSeq database
      • Parameters of Evolutionary Scale Modeling (ESM) models
      • params
      • PDB70
      • PDB70 for ColabFold
      • PINDER
      • PLINDER
      • Protein Data Bank
      • Protein Data Bank database in mmCIF format
      • Protein Data Bank database in SEQRES records
      • Tara Oceans 18S amplicon
      • Tara Oceans MATOU gene catalog
      • Tara Oceans MGT transcriptomes
      • Uniclust30
      • UniProtKB
      • UniRef100
      • UniRef30
      • UniRef90
      • Updated databases for ColabFold
    • Using HuggingFace Datasets
  1. Unity
  2. Documentation
  3. Datasets
  4. Bioinformatics
  5. AlphaFold3 Databases

AlphaFold3 Databases

Path:/datasets/bio/alphafold3
URL:https://github.com/google-deepmind/alphafold3
Downloaded:2024-11-17
Cite:Abramson, J., Adler, J., Dunger, J. et al. Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature 630, 493–500 (2024). https://doi.org/10.1038/s41586-024-07487-w
Variant:
    Bibtex:
    @article{Abramson2024, title = {Accurate structure prediction of biomolecular interactions with AlphaFold 3}, volume = {630}, ISSN = {1476-4687}, url = {http://dx.doi.org/10.1038/s41586-024-07487-w}, DOI = {10.1038/s41586-024-07487-w}, number = {8016}, journal = {Nature}, publisher = {Springer Science and Business Media LLC}, author = {Abramson,  Josh and Adler,  Jonas and Dunger,  Jack and Evans,  Richard and Green,  Tim and Pritzel,  Alexander and Ronneberger,  Olaf and Willmore,  Lindsay and Ballard,  Andrew J. and Bambrick,  Joshua and Bodenstein,  Sebastian W. and Evans,  David A. and Hung,  Chia-Chun and O’Neill,  Michael and Reiman,  David and Tunyasuvunakool,  Kathryn and Wu,  Zachary and Žemgulytė,  Akvilė and Arvaniti,  Eirini and Beattie,  Charles and Bertolli,  Ottavia and Bridgland,  Alex and Cherepanov,  Alexey and Congreve,  Miles and Cowen-Rivers,  Alexander I. and Cowie,  Andrew and Figurnov,  Michael and Fuchs,  Fabian B. and Gladman,  Hannah and Jain,  Rishub and Khan,  Yousuf A. and Low,  Caroline M. R. and Perlin,  Kuba and Potapenko,  Anna and Savy,  Pascal and Singh,  Sukhdeep and Stecula,  Adrian and Thillaisundaram,  Ashok and Tong,  Catherine and Yakneen,  Sergei and Zhong,  Ellen D. and Zielinski,  Michal and Žídek,  Augustin and Bapst,  Victor and Kohli,  Pushmeet and Jaderberg,  Max and Hassabis,  Demis and Jumper,  John M.}, year = {2024}, month = may, pages = {493–500}}
    
    Last modified: Friday, March 14, 2025 at 2:20 PM. See the commit on GitLab.
    University of Massachusetts Amherst University of Massachusetts Amherst University of Rhode Island University of Rhode Island University of Massachusetts Dartmouth University of Massachusetts Dartmouth University of Massachusetts Lowell University of Massachusetts Lowell University of Massachusetts Boston University of Massachusetts Boston Mount Holyoke College Mount Holyoke College Smith College Smith College
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