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      • UniProtKB
      • UniRef100
      • UniRef30
      • UniRef90
      • Updated databases for ColabFold
    • Using HuggingFace Datasets

Documentation

  • Requesting An Account
  • Get Started
    • Quick Start
    • Common Terms
    • HPC Resources
    • Theory of HPC
      • Overview of threads, cores, and sockets in Slurm for HPC workflows
    • Git Guide
  • Connecting to Unity
    • SSH
    • Unity OnDemand
    • Connecting to Desktop VS Code
  • Get Help
    • Frequently Asked Questions
    • How to Ask for Help
    • Troubleshooting
  • Cluster Specifications
    • Node List
    • Partition List
      • Gypsum
    • Storage
    • Node Features (Constraints)
      • NVLink and NVSwitch
    • GPU Summary List
  • Managing Files
    • Command Line Interface (CLI)
    • Disk Quotas
    • FileZilla
    • Globus
    • Scratch: HPC Workspace
    • Unity OnDemand File Browser
  • Submitting Jobs
    • Batch Jobs
      • Array Batch Jobs
      • Large Job Counts
      • Monitor a batch job
    • Helper Scripts
    • Interactive CLI Jobs
    • Unity OnDemand
    • Message Passing Interface (MPI)
    • Slurm cheat sheet
  • Software Management
    • Building Software from Scratch
    • Conda
    • Modules
      • Module Usage
    • Renv
    • Unity OnDemand
      • JupyterLab OnDemand
    • Venv
  • Tools & Software
    • ColabFold
    • R
      • R Parallelization
    • Unity GPUs
  • Datasets
    • AI and ML
      • AlpacaFarm
      • audioset
      • bigcode
      • biomed_clip
      • blip_2
      • blip_2
      • coco
      • Code Llama
      • DeepAccident
      • DeepSeek
      • DINO v2
      • epic-kitchens
      • florence
      • gemma
      • glm
      • gpt
      • gte-Qwen2
      • ibm-granite
      • Idefics2
      • Imagenet 1K
      • inaturalist
      • infly
      • instruct-blip
      • internLM
      • intfloat
      • LAION
      • lg
      • linq
      • llama
      • Llama2
      • llama3
      • llama4
      • Llava_OneVision
      • Lumina
      • mixtral
      • msmarco
      • natural-questions
      • objaverse
      • openai-whisper
      • phi
      • playgroundai
      • pythia
      • qwen
      • R1-1776
      • rag-sequence-nq
      • red-pajama-v2
      • s1-32B
      • satlas_pretrain
      • scalabilityai
      • sft
      • SlimPajama
      • t5
      • Tulu
      • V2X
      • video-MAE
      • videoMAE-v2
      • vit
      • wildchat
    • Bioinformatics
      • AlphaFold3 Databases
      • BFD/MGnify
      • Big Fantastic Database
      • checkm
      • ColabFoldDB
      • dfam
      • EggNOG
      • EggNOG
      • gmap
      • GMAP-GSNAP database (human genome)
      • GTDB
      • igenomes
      • Kraken2
      • MGnify
      • NCBI BLAST databases
      • NCBI RefSeq database
      • NCBI RefSeq database
      • Parameters of Evolutionary Scale Modeling (ESM) models
      • params
      • PDB70
      • PDB70 for ColabFold
      • PINDER
      • PLINDER
      • Protein Data Bank
      • Protein Data Bank database in mmCIF format
      • Protein Data Bank database in SEQRES records
      • Tara Oceans 18S amplicon
      • Tara Oceans MATOU gene catalog
      • Tara Oceans MGT transcriptomes
      • Uniclust30
      • UniProtKB
      • UniRef100
      • UniRef30
      • UniRef90
      • Updated databases for ColabFold
    • Using HuggingFace Datasets
  1. Unity
  2. Documentation
  3. Datasets
  4. Bioinformatics
  5. Tara Oceans MATOU gene catalog

Tara Oceans MATOU gene catalog

Path:/datasets/bio/tara-oceans/MATOU-gene-catalog
URL:https://www.genoscope.cns.fr/tara/localdata/data/Geneset-v1
Downloaded:2017-12-11
Cite:Carradec, Q., Pelletier, E., Da Silva, C., Alberti, A., Seeleuthner, Y., Blanc-Mathieu, R., Lima-Mendez, G., Rocha, F., Tirichine, L., Labadie, K., Kirilovsky, A., Bertrand, A., Engelen, S., Madoui, M. A., Méheust, R., Poulain, J., Romac, S., Richter, D. J., Yoshikawa, G., Dimier, C., … Wincker, P. (2018). A global ocean atlas of eukaryotic genes. Nature communications, 9(1), 373. https://doi.org/10.1038/s41467-017-02342-1
Variant:
    Bibtex:
    @article{Carradec2018,title = {A global ocean atlas of eukaryotic genes},volume = {9},ISSN = {2041-1723},url = {http://dx.doi.org/10.1038/s41467-017-02342-1},DOI = {10.1038/s41467-017-02342-1},number = {1},journal = {Nature Communications},publisher = {Springer Science and Business Media LLC},author = {Carradec,  Quentin and Pelletier,  Eric and Da Silva,  Corinne and Alberti,  Adriana and Seeleuthner,  Yoann and Blanc-Mathieu,  Romain and Lima-Mendez,  Gipsi and Rocha,  Fabio and Tirichine,  Leila and Labadie,  Karine and Kirilovsky,  Amos and Bertrand,  Alexis and Engelen,  Stefan and Madoui,  Mohammed-Amin and Méheust,  Raphaël and Poulain,  Julie and Romac,  Sarah and Richter,  Daniel J. and Yoshikawa,  Genki and Dimier,  Céline and Kandels-Lewis,  Stefanie and Picheral,  Marc and Searson,  Sarah and Acinas,  Silvia G. and Boss,  Emmanuel and Follows,  Michael and Gorsky,  Gabriel and Grimsley,  Nigel and Karp-Boss,  Lee and Krzic,  Uros and Pesant,  Stephane and Reynaud,  Emmanuel G. and Sardet,  Christian and Sieracki,  Mike and Speich,  Sabrina and Stemmann,  Lars and Velayoudon,  Didier and Weissenbach,  Jean and Jaillon,  Olivier and Aury,  Jean-Marc and Karsenti,  Eric and Sullivan,  Matthew B. and Sunagawa,  Shinichi and Bork,  Peer and Not,  Fabrice and Hingamp,  Pascal and Raes,  Jeroen and Guidi,  Lionel and Ogata,  Hiroyuki and de Vargas,  Colomban and Iudicone,  Daniele and Bowler,  Chris and Wincker,  Patrick},year = {2018},month = jan}
    
    Last modified: Friday, March 14, 2025 at 2:20 PM. See the commit on GitLab.
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